GLANSIS Data Dictionary

Data Dictionary

This dictionary includes descriptions and information for the products, tools, and data that GLANSIS serves.

Most of the terms in this section are used in the Species List Generator. This search engine searches individual report data and returns a list of all species that have at least one report that fits the selected criteria, even if that report is not representative of the species' presence in the Great Lakes overall. For example, if you select a certain pathway from the 'Pathway' field, a species is included in the resulting list if any report assigned it to that pathway, which does not necessarily indicate that this is the primary pathway by which the species reached the Great Lakes.

CAUTION: If any subselector is turned on here, when a user 'clicks through' the profile to the data table, the table includes ONLY specimens meeting the selection criteria. For example, if some reports of zebra mussels indicated their pathway as 'shipping ballast water' and others as 'unknown', then if you select 'shipping' as the pathway you will see only the data for points designated as 'shipping', not all the zebra mussel data. We highly recommend only using the pathway selector to generate the list, then resetting this search to 'all' before clicking through when a user actually wants to access all the data for a species on a particular pathway-related list.
  • Category (Species List Generator and results) – This feature of the Species List Generator searches based on whether or not the species is native to any portion of the selected geographic area.
    • Nonindigenous – The species included in the GLANSIS nonindigenous list are those which are considered nonindigenous within the Great Lakes basin by meeting at least three of the following criteria (based on Ricciardi 2006):
      1. the species appeared suddenly and had not been recorded in the basin previously;
      2. it subsequently spreads within the basin;
      3. its distribution in the basin is restricted compared with native species;
      4. its global distribution is anomalously disjunct (meaning it contains widely scattered and isolated populations);
      5. its global distribution is associated with human vectors of dispersal;
      6. the basin is isolated from regions possessing the most genetically and morphologically similar species.
    • Range Expander – The species included in GLANSIS on the 'range expander' list are those which are considered nonindigenous to a portion of the Great Lakes basin according to the above nonindigenous criterion but which have been identified in the peer-reviewed literature and/or by consensus of expert review to be native or cryptogenic in some portion of the basin. Cryptogenic species are those species that cannot be verified as either native or introduced (after Carlton, 1996).
    • Watchlist – The watchlist is intended to strike a balance between being precautionary and practical for support of early detection efforts. As of 2020, only those species assessed as likely to be introduced AND to be able to overwinter and reproduce in the Great Lakes are included in the watchlist.
      • Geographic criterion – Lives in a known donor region or in a zone with high specialization, species pool, or climate conditions that match the Great Lakes.
      • Aquatic criterion – Only aquatic species are included.
      • Establishment criterion – Not already established in the Great Lakes, but assessed as 'likely' to become so.
  • Status (Species List Generator, species profiles)
    • All – Returns all data about the species that fit the selected criteria, regardless of status.
    • Established – Reproducing and overwintering in any watershed of the Great Lakes.
    • Reported – Species was observed somewhere in the Great Lakes below the ordinary high water mark, but is not known to be established.
    • Established or reported – Returns only data categorized as 'established' or 'reported,' excluding other options (e.g., 'failed', 'extirpated').
  • Group (Species List Generator, Map Explorer, Species Level Risk Assessments Explorer) The Group terms are from the USGS Nonindigenous Aquatic Species controlled vocabulary. The chart below maps the USGS Group terms to the corresponding taxa from the Integrated Taxonomic Information System (ITIS).
Group ITIS Taxa
Algae Divisions Charophyta, Chlorophyta, Chrysophyta, Cryptophycophyta, Ochrophyta, Phaeophyta, Pyrrophycophyta, Rhodophyta, Xanthophyta
Annelids – Oligochaetes Class Clitellata
Annelids – Polychaetes Class Polychaeta
Bacteria Kingdom Bacteria
Bryozoans Phylum Bryozoa
Coelenterates – Hydrozoans (Hydroids) Class Hydrozoa
Crustaceans – Amphipods Order Amphipoda
Crustaceans – Cladocerans Suborder Cladocera
Crustaceans – Copepods Subclass Copepoda
Crustaceans – Crayfish Superfamilies Astacoidea and Parastacoidea
Crustaceans – Mysids Order Mysida
Fishes Classes Actinopterygii, Cephalaspidomorphi, Chondrichthyes, Myxini, Pteraspidomorphi, Sarcopterygii
Insects Class Insecta
Mollusks – Bivalves (Mussels, clams, oysters) Class Bivalvia
Mollusks – Gastropods (Snails) Class Gastropoda
Plants Kingdom Plantae EXCEPT Algae (above)
Platyhelminthes Phylum Platyhelminthes
Protozoans Kingdom Protozoa EXCEPT Algae (above) + Phylum Myxozoa
Rotifers Phylum Rotifera
Viruses not standardized in ITIS

These additional groups are available only in the Risk Assessment Clearinghouse - Methods Explorer or Species Risk Explorer:

Group ITIS Taxa
Amphibian Class Amphibia
Animals Kingdom Animalia
Barnacle Infraclass Cirripedia
Birds Class Aves
Cnidarian Phylum Cnidaria
Crustacean – Crab Infraorders Anomura, Brachyura,
Crustacean – Isopoda Order Isopoda
Crustaceans – Shrimp Suborder Dendrobrachiata + SO Pleocyemata- Infraorders Caridea, Stenopodidea, Thalassinidea
Crustaceans – Tanaid Order Tanaidacea
Flatworm Free-living members of Phylum Platyhelminthes
Fluke Class Trematoda
Fungi Kingdom Fungi
Mammals Class Mammalia
Microsporidea Phylum Microsporidea
Nematodes Phylum Nematoda
Phytoplankton microscopic free-floating members of Algae (above)
Plankton all microscopic free-floating flora and fauna
Reptile Class Reptilia
Reptile – Turtle Order Testudines
Tapeworm Class Cestoda
Tunicate Subphylum Urochordata
Zooplankton all microscopic free-floating animals (not including juvenile forms of larger animals)
  • Scientific Name (Species List Generator and results) – Name agreed to by taxonomists internationally. The Integrated Taxonomic Information System (ITIS - itis.gov) is the primary authority consulted to resolve conflicting scientific names.
  • Common Name (Species List Generator and results) – The non-scientific name by which a species is colloquially known most commonly in the US.
  • Pathway (Species List Generator) – Indicates the means of transport. Categories include Aquaculture, Canals, Dispersed, Escaped captivity, Planted, Released, Shipping, Stocked, and Hitch hiker.

Chart that symbolizes the different stages of invasion and the corresponding terminology and management actions used in response.

Figure 1: Proposed framework by Kocovsky et al. (2018; Figure 1), modified from Blackburn et al. (2011; Figure 1), for management alternatives for non-native and invasive species.

Flowchart of the process by which GLANSIS determines the correct vocabulary for the establishment process of a species.

Figure 2: GLANSIS controlled vocabulary for the establishment process.

Considerations (Methods Explorer and results, Species Level Risk Assessments Explorer results) – The GLANSIS Risk Clearinghouse Methods Explorer enables searching for Risk Assessments Method Literature by features of the methods. Searchable features include whether the method addresses each of the following considerations.

  • Arrival – The initial stage of the establishment process during which the non-native species initially enters the system of interest.
  • Survival – The stage marked as 'Survival' in Figure 1.
  • Establishment – The stage at which a species is reproducing and overwintering. Since survival is an element of establishment, a method that considers survival is always categorized as considering establishment as well.
  • Spread – The section of Figure 1 between C3 and D2.
  • Ecological Impacts – See Impact Terms section of dictionary.
  • Socioeconomic Impacts – See Impact Terms section of dictionary.
  • Manageability – An assessment considers manageability if it contains any statements about whether a species can be managed and/or how easy or difficult management is for that species.
  • Management (Species profiles) – Management efforts related to controlling or eradicating species, including Regulations and Biological, Physical, or Chemical Controls.

  • Lake (HUC) (Species List Generator, Map Explorer, species profiles) – All GLANSIS records are point data, but each point is assigned the corresponding Hydrologic Unit Code (HUC). An explanation of HUCs can be found at https://water.usgs.gov/GIS/huc.html.
  • Basemap (Map Explorer) – Various foundational map layers, such as Topographic, National Geographic, Oceans, Gray, Dark Gray, Imagery, and USA Topographic.
  • Surface Layers (Map Explorer)
    • General: Geomorphology depth, Geomorphology substrate, Spring/Summer surface temperatures, Cumulative degree days, Ice duration, and Upwelling.
    • Ecological Classification: Text descriptions of the 77 AEUs and their assigned unique color. Aquatic ecological units (An ecological classification with 77 types, each of which depicts a unique combination of depth, thermal regime, mechanical energy, and tributary influence).
    • Habitat Suitability: Layers representing the suitability of the Great Lakes for a particular species (e.g., Hydrilla, Grass Carp, Snakehead) based on Niche Centrality, Benthic Temp, Growing Degree Days, SAV, and Photic zones.
  • Shoreline Layers (Map Explorer) – Includes Shoreline Classification and Sinuosity.

The terms in this section are used exclusively in the Risk Assessment Methods Explorer.

  • Publication Type
    • Peer – Peer-reviewed literature appears in published scientific journal articles or books.
    • Gray – Information produced outside of traditional publishing (reports, policy literature, theses, working papers, etc).
    • Web – Sources taken from the internet, not typically subject to a review process.
  • Geographic scope – This field selects the geographic range of the original methodology.
  • Taxonomic scope – This field selects the taxa for which the method was designed.
  • Assessment Type
    • Qualitative – Assessment based on non-numerical data.
    • Quantitative – Assessment based on numerical data.
    • Scenario (vector) associated risk – Assessment in which multiple possible future scenarios are assessed for risk.
    • Semi-quantitative – Assessment in which qualitative data is collected, then assigned numerical values.
  • Result Type
    • Binary – Results answer a yes/no question.
    • Categorical – Results fall into predefined categories (e.g., high, moderate, low).
    • Heat Maps – Results are presented as a map with color indicating an area's risk.
    • Probabilistic – Results express risk as a percentage.
  • Review Type
    • Agency – Used for government agency reports.
    • Committee – Reviewed by a committee (e.g. theses and dissertations).
    • External – Reviewed by reviewer(s) outside the agency/institution.
    • Internal – Reviewed by reviewer(s) within the agency/institution.
    • Peer – Highest level of review. Truly blind review process.

An impact is defined as an effect that a species has on an ecosystem, flora/fauna, human health, and/or economy in the area where it is introduced. Impacts are recorded globally in the backbone NAS Database where a species is introduced outside of its historic range.

GLANSIS Organisms Impact Assessments (OIA) and Risk Assessments (RA) subdivide impact into 3 primary categories: Environmental Impact, Socio-economic Impact, and Beneficial Impact.

Environmental Impact
  • Disease/Parasite/Toxicity – The species poses a hazard or threat to the health of native species.
  • Competition – The species shares a niche with another species causing a measurable decrease.
  • Predation/Herbivory – The species consumes or is consumed by another species.
  • Genetic – The species affects native populations genetically (e.g. hybridization).
  • Environmental Water Quality – Measurable changes in water chemistry/quality/parameters.
  • Habitat Alteration – Modifies the physical, biotic, or abiotic structure of the environment.
Socioeconomic Impact
  • Human Health – The species causes health impacts to human well-being.
  • Infrastructure – Impairs the normal operation of human-made structures or facilities.
  • Socioeconomic Water Quality – Measurable changes to water quality directly impacting human use.
  • Commerce – Decreases to profit, employment, production, or trade.
  • Recreation – Interferes with entertainment activities (boating, swimming, tourism).
  • Aesthetic – Diminishes the perceived aesthetic or natural value of the area.
Beneficial Impact
  • Biocontrol – Acts as a biological control on other undesirable species.
  • Harvest – Has direct commercial value for fisheries, agriculture, bait, etc.
  • Recreational Value – Directly used for recreation or kept as a pet.
  • Research – Has medicinal or research value.
  • Water Quality Benefit – Removes toxins or commonly used for bioremediation.
  • Other Ecological Benefits – Positive benefits to the ecosystem or specific native species.

Table 1. Cross-platform comparison of the GLANSIS and NAS Impact Type categories.

GLANSIS OIA/RA GLANSIS Species Profile Formula NAS Impact Database NAS Profiles
E1. Hazard to the health of native species Disease/Parasite/Toxicity Disease/Parasite/Toxicity Disease/Parasite/Toxicity
E2. Outcompetes native species Competition Competition Competition
E3. Alters predator-prey dynamics Predation/Herbivory OR Food Web Predation/Herbivory Predation/Herbivory
E4. Affects native species genetically Genetic Effects Genetic Genetic
E5. Negatively affects water quality Water Quality AND #wqenvironment Water Quality
#wqenvironment
#wqecon
#wqbeneficial
Water Quality
E6. Alters the physical ecosystem Habitat Alteration Habitat Alteration Habitat Alteration
S1. Hazard to human health Human Health NOT #Beneficial Human Health Human Health
S2. Damage to infrastructure [Infrastructure NOT #beneficial] OR [Navigation NOT #beneficial] Infrastructure
#beneficial
Infrastructure
S3. Changes to water quality negatively impact human use Water Quality AND #wqecon Water Quality Impact
S4. Negative impact to markets or human sectors [Commerce NOT #beneficial] OR [Aquaculture/Agriculture NOT #beneficial] OR [Property Value NOT #beneficial] Commerce
#beneficial
Commerce
S5. Inhibits recreational activities Recreation NOT #beneficial Recreation
#beneficial
Recreation
S6. Diminishes perceived aesthetics Other AND #aesthetic Aesthetic